Fine-mapping Documentation
  • Introduction
  • Data Preprocessing
    • 1. File formatting
    • 2. File splitting
    • 3. LD matrix generation
    • 4. Functional annotation generation
  • Software Running
  • CAVIARBF C++ version
  • CAVIARBF R version
  • FINEMAP
  • Reference
    • Reference
      • Approximately independent linkage disequilibrium blocks in human populations
      • PAINTOR
      • fgwas
      • CAVIAR
      • CAVIARBF
 
Fine-mapping Documentation
  • Docs »
  • Reference

Reference¶


Approximately independent linkage disequilibrium blocks in human populations¶

Paper: Pickrell et al. Bioinformatics. 2016
Website: https://bitbucket.org/nygcresearch/ldetect-data/src

PAINTOR¶

Paper: Kichaev et al. PLOS Genetics, 2014, Kichaev et al. American Journal of Human Genetics, 2015, Kichaev et al. Bioinformatics, 2016
Website: https://github.com/gkichaev/PAINTOR_V3.0

fgwas¶

Paper: Pickrell American Journal of Human Genetics, 2014
Website: https://github.com/joepickrell/fgwas

CAVIAR¶

Paper: Hormozdiari et al. Genetics, 2014
Website: http://genetics.cs.ucla.edu/caviar/

CAVIARBF¶

Paper: Chen et al. Genetics, 2015
Website: https://bitbucket.org/Wenan/caviarbf

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